IL_8YOO_227

3D structure

PDB id

8YOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CGC*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YOO_227 not in the Motif Atlas

Geometric match to IL_4LFB_059

Geometric discrepancy: 0.1214

The information below is about IL_4LFB_059

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8YOO|1|S2|C|877
8YOO|1|S2|G|878
8YOO|1|S2|C|879
*
8YOO|1|S2|G|907
8YOO|1|S2|A|908
8YOO|1|S2|G|909

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19