IL_8YOO_279

3D structure

PDB id

8YOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GCGGAC*GUGCGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YOO_279 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.3468

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

8YOO|1|L5|G|1171
8YOO|1|L5|C|1172
8YOO|1|L5|G|1173
8YOO|1|L5|G|1174
8YOO|1|L5|A|1175
8YOO|1|L5|C|1176
*
8YOO|1|L5|G|1185
8YOO|1|L5|U|1186
8YOO|1|L5|G|1187
8YOO|1|L5|C|1188
8YOO|1|L5|G|1189
8YOO|1|L5|C|1190

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

60S ribosomal protein L5