IL_8YOO_283

3D structure

PDB id

8YOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CAUUG*CCAAGCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YOO|1|L5|C|4466
8YOO|1|L5|A|4467
8YOO|1|L5|U|4468
8YOO|1|L5|U|4469
8YOO|1|L5|G|4470
*
8YOO|1|L5|C|4485
8YOO|1|L5|C|4486
8YOO|1|L5|A|4487
8YOO|1|L5|A|4488
8YOO|1|L5|G|4489
8YOO|1|L5|C|4490
8YOO|1|L5|G|4491

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain LV

60S ribosomal protein L23

Chain Lm

Large ribosomal subunit protein eL40