IL_8YOP_007
3D structure
- PDB id
- 8YOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGAAU*ACAUGUG
- Length
- 12 nucleotides
- Bulged bases
- 8YOP|1|L5|G|119, 8YOP|1|L5|U|150
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YOP_007 not in the Motif Atlas
- Homologous match to IL_8GLP_287
- Geometric discrepancy: 0.1101
- The information below is about IL_8GLP_287
- Detailed Annotation
- Kink-turn with embedded cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_65996.1
- Basepair signature
- cWW-L-cWW-L-tSH-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
8YOP|1|L5|C|118
8YOP|1|L5|G|119
8YOP|1|L5|A|120
8YOP|1|L5|A|121
8YOP|1|L5|U|122
*
8YOP|1|L5|A|147
8YOP|1|L5|C|148
8YOP|1|L5|A|149
8YOP|1|L5|U|150
8YOP|1|L5|G|151
8YOP|1|L5|U|152
8YOP|1|L5|G|153
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LG
- 60S ribosomal protein L7a
- Chain LN
- 60S ribosomal protein L15
- Chain Lh
- 60S ribosomal protein L35
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