IL_8YOP_022

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AUUCAAC*GCGCAUUU

Length

15 nucleotides

Bulged bases

8YOP|1|L5|U|467, 8YOP|1|L5|U|687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YOP|1|L5|A|466
8YOP|1|L5|U|467
8YOP|1|L5|U|468
8YOP|1|L5|C|469
8YOP|1|L5|A|470
8YOP|1|L5|A|471
8YOP|1|L5|C|472
*
8YOP|1|L5|G|682
8YOP|1|L5|C|683
8YOP|1|L5|G|684
8YOP|1|L5|C|685
8YOP|1|L5|A|686
8YOP|1|L5|U|687
8YOP|1|L5|U|688
8YOP|1|L5|U|689

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain Lr

60S ribosomal protein L28