IL_8YOP_027

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GCCCGG*UC

Length

8 nucleotides

Bulged bases

8YOP|1|L5|C|501, 8YOP|1|L5|C|502, 8YOP|1|L5|C|503, 8YOP|1|L5|G|504

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YOP_027 not in the Motif Atlas

Geometric match to IL_4LFB_007

Geometric discrepancy: 0.2293

The information below is about IL_4LFB_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_75289.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

8YOP|1|L5|G|500
8YOP|1|L5|C|501
8YOP|1|L5|C|502
8YOP|1|L5|C|503
8YOP|1|L5|G|504
8YOP|1|L5|G|505
*
8YOP|1|L5|U|653
8YOP|1|L5|C|654

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LQ

60S ribosomal protein L18