IL_8YOP_063

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YOP_063 not in the Motif Atlas

Homologous match to IL_8C3A_033

Geometric discrepancy: 0.0961

The information below is about IL_8C3A_033

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

8YOP|1|L5|C|1551
8YOP|1|L5|G|1552
8YOP|1|L5|A|1553
8YOP|1|L5|A|1554
8YOP|1|L5|G|1555
*
8YOP|1|L5|U|1572
8YOP|1|L5|G|1573
8YOP|1|L5|G|1574
8YOP|1|L5|A|1575
8YOP|1|L5|G|1576

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LR

60S ribosomal protein L19

Chain Lp

60S ribosomal protein L37a