IL_8YOP_069

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUCGCAGACCCGACGCGCCACG*CG

Length

24 nucleotides

Bulged bases

8YOP|1|L5|C|1715, 8YOP|1|L5|G|1716, 8YOP|1|L5|C|1717, 8YOP|1|L5|C|1718

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YOP|1|L5|C|1694
8YOP|1|L5|U|1695
8YOP|1|L5|C|1696
8YOP|1|L5|G|1697
8YOP|1|L5|C|1698
8YOP|1|L5|A|1699
8YOP|1|L5|G|1700
8YOP|1|L5|A|1701
8YOP|1|L5|C|1702
8YOP|1|L5|C|1703
8YOP|1|L5|C|1704
8YOP|1|L5|G|1705
8YOP|1|L5|A|1706
8YOP|1|L5|C|1707
8YOP|1|L5|G|1708
8YOP|1|L5|C|1715
8YOP|1|L5|G|1716
8YOP|1|L5|C|1717
8YOP|1|L5|C|1718
8YOP|1|L5|A|1719
8YOP|1|L5|C|1720
8YOP|1|L5|G|1721
*
8YOP|1|L5|C|1841
8YOP|1|L5|G|1842

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LF

60S ribosomal protein L7

Chain LQ

60S ribosomal protein L18

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29