IL_8YOP_077

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UUGG*UCA

Length

7 nucleotides

Bulged bases

8YOP|1|L5|U|1757

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YOP_077 not in the Motif Atlas

Geometric match to IL_6F4H_001

Geometric discrepancy: 0.2787

The information below is about IL_6F4H_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

8YOP|1|L5|U|1756
8YOP|1|L5|U|1757
8YOP|1|L5|G|1758
8YOP|1|L5|G|1759
*
8YOP|1|L5|U|1773
8YOP|1|L5|C|1774
8YOP|1|L5|A|1775

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L5

Chain LI

Large ribosomal subunit protein uL16

Chain LJ

60S ribosomal protein L11