IL_8YOP_128

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

8YOP|1|L5|A|3785, 8YOP|1|L5|C|3791, 8YOP|1|L5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YOP_128 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.0765

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8YOP|1|L5|C|3781
8YOP|1|L5|C|3782
8YOP|1|L5|A|3783
8YOP|1|L5|A|3784
8YOP|1|L5|A|3785
8YOP|1|L5|U|3786
8YOP|1|L5|G|3787
8YOP|1|L5|C|3788
8YOP|1|L5|C|3789
8YOP|1|L5|U|3790
8YOP|1|L5|C|3791
8YOP|1|L5|G|3792
*
8YOP|1|L5|C|3808
8YOP|1|L5|G|3809
8YOP|1|L5|C|3810
8YOP|1|L5|G|3811

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA