IL_8YOP_201
3D structure
- PDB id
- 8YOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 8YOP|1|S2|U|172
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YOP_201 not in the Motif Atlas
- Homologous match to IL_8C3A_402
- Geometric discrepancy: 0.082
- The information below is about IL_8C3A_402
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.4
- Basepair signature
- cWW-L-R-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
8YOP|1|S2|G|145
8YOP|1|S2|G|146
8YOP|1|S2|A|147
8YOP|1|S2|U|148
8YOP|1|S2|A|149
8YOP|1|S2|A|150
8YOP|1|S2|C|151
*
8YOP|1|S2|G|167
8YOP|1|S2|C|168
8YOP|1|S2|U|169
8YOP|1|S2|A|170
8YOP|1|S2|A|171
8YOP|1|S2|U|172
8YOP|1|S2|A|173
8YOP|1|S2|C|174
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain LW
- 60S ribosomal protein L24
- Chain SG
- 40S ribosomal protein S6
- Chain SY
- 40S ribosomal protein S24
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