IL_8YOP_214

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCACU*AG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YOP_214 not in the Motif Atlas

Homologous match to IL_8C3A_416

Geometric discrepancy: 0.0747

The information below is about IL_8C3A_416

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.1

Basepair signature

cWW-cSH-cWS-tWH-cWW

Number of instances in this motif group

5

Unit IDs

8YOP|1|S2|C|491
8YOP|1|S2|C|492
8YOP|1|S2|A|493
8YOP|1|S2|C|494
8YOP|1|S2|U|495
*
8YOP|1|S2|A|508
8YOP|1|S2|G|509

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SJ

40S ribosomal protein S9

Chain SY

40S ribosomal protein S24