IL_8YOP_273
3D structure
- PDB id
- 8YOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- 8YOP|1|S2|A|1825
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YOP_273 not in the Motif Atlas
- Geometric match to IL_3WBM_002
- Geometric discrepancy: 0.329
- The information below is about IL_3WBM_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
8YOP|1|S2|C|1708
8YOP|1|S2|G|1709
8YOP|1|S2|C|1710
8YOP|1|S2|U|1711
*
8YOP|1|S2|A|1822
8YOP|1|S2|A|1823
8YOP|1|S2|A|1824
8YOP|1|S2|A|1825
8YOP|1|S2|G|1826
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Ln
- 60S ribosomal protein L41
- Chain SX
- 40S ribosomal protein S23
Coloring options: