IL_8YP6_021

3D structure

PDB id

8YP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AGACG*CGGUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YP6_021 not in the Motif Atlas

Homologous match to IL_6CZR_130

Geometric discrepancy: 0.28

The information below is about IL_6CZR_130

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.3

Basepair signature

cWW-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8YP6|1|a|A|446
8YP6|1|a|G|447
8YP6|1|a|A|448
8YP6|1|a|C|449
8YP6|1|a|G|450
*
8YP6|1|a|C|463
8YP6|1|a|G|464
8YP6|1|a|G|465
8YP6|1|a|U|466
8YP6|1|a|A|467
8YP6|1|a|U|468

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

Small ribosomal subunit protein uS4

Chain p

Small ribosomal subunit protein bS16