IL_8YP6_024
3D structure
- PDB id
- 8YP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 8YP6|1|a|A|512, 8YP6|1|a|U|514, 8YP6|1|a|A|515
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YP6_024 not in the Motif Atlas
- Homologous match to IL_4LFB_021
- Geometric discrepancy: 0.4395
- The information below is about IL_4LFB_021
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8YP6|1|a|G|495
8YP6|1|a|U|496
8YP6|1|a|G|497
8YP6|1|a|C|498
8YP6|1|a|C|499
8YP6|1|a|A|500
8YP6|1|a|G|501
*
8YP6|1|a|C|508
8YP6|1|a|G|509
8YP6|1|a|G|510
8YP6|1|a|U|511
8YP6|1|a|A|512
8YP6|1|a|A|513
8YP6|1|a|U|514
8YP6|1|a|A|515
8YP6|1|a|C|516
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain c
- Small ribosomal subunit protein uS3
- Chain d
- Small ribosomal subunit protein uS4
- Chain l
- Small ribosomal subunit protein uS12
Coloring options: