IL_8YP6_035

3D structure

PDB id

8YP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YP6_035 not in the Motif Atlas

Homologous match to IL_4LFB_032

Geometric discrepancy: 0.2663

The information below is about IL_4LFB_032

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.3

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

8YP6|1|a|G|754
8YP6|1|a|G|755
8YP6|1|a|G|756
8YP6|1|a|A|757
8YP6|1|a|G|758
*
8YP6|1|a|U|784
8YP6|1|a|C|785

Current chains

Chain a

16S rRNA

Nearby chains

Chain k

Small ribosomal subunit protein uS11