IL_8YP6_036

3D structure

PDB id

8YP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YP6_036 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.1867

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8YP6|1|a|C|759
8YP6|1|a|G|760
8YP6|1|a|A|761
8YP6|1|a|A|762
8YP6|1|a|C|763
*
8YP6|1|a|G|779
8YP6|1|a|G|780
8YP6|1|a|U|781
8YP6|1|a|A|782
8YP6|1|a|G|783

Current chains

Chain a

16S rRNA

Nearby chains

Chain k

Small ribosomal subunit protein uS11