IL_8YUO_081

3D structure

PDB id

8YUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8YUO|1|a|G|801, 8YUO|1|a|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YUO_081 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.0721

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8YUO|1|a|G|674
8YUO|1|a|A|675
8YUO|1|a|A|676
8YUO|1|a|A|677
8YUO|1|a|C|678
*
8YUO|1|a|G|799
8YUO|1|a|A|800
8YUO|1|a|G|801
8YUO|1|a|A|802
8YUO|1|a|U|803
8YUO|1|a|A|804
8YUO|1|a|G|805
8YUO|1|a|C|806

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain k

50S ribosomal protein L15