IL_8YUO_091

3D structure

PDB id

8YUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

GGGGUAG*CGAAUAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YUO_091 not in the Motif Atlas

Homologous match to IL_5J7L_270

Geometric discrepancy: 0.0641

The information below is about IL_5J7L_270

Detailed Annotation

7x7 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_29198.2

Basepair signature

cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8YUO|1|a|G|856
8YUO|1|a|G|857
8YUO|1|a|G|858
8YUO|1|a|G|859
8YUO|1|a|U|860
8YUO|1|a|A|861
8YUO|1|a|G|862
*
8YUO|1|a|C|915
8YUO|1|a|G|916
8YUO|1|a|A|917
8YUO|1|a|A|918
8YUO|1|a|U|919
8YUO|1|a|A|920
8YUO|1|a|C|921

Current chains

Chain a

23S rRNA

Nearby chains

Chain b

5S ribosomal RNA; 5S rRNA

Chain l

50S ribosomal protein L16

Chain v

50S ribosomal protein L27

Chain y

50S ribosomal protein L30