3D structure

PDB id
8YUO (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.25 Å

Loop

Sequence
UUAAUUGAUG*UUGAUCGAAG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8YUO_138 not in the Motif Atlas
Homologous match to IL_5J7L_387
Geometric discrepancy: 0.0726
The information below is about IL_5J7L_387
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_61249.1
Basepair signature
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW
Number of instances in this motif group
1

Unit IDs

8YUO|1|a|U|1851
8YUO|1|a|U|1852
8YUO|1|a|A|1853
8YUO|1|a|A|1854
8YUO|1|a|U|1855
8YUO|1|a|U|1856
8YUO|1|a|G|1857
8YUO|1|a|A|1858
8YUO|1|a|U|1859
8YUO|1|a|G|1860
*
8YUO|1|a|U|1882
8YUO|1|a|U|1883
8YUO|1|a|G|1884
8YUO|1|a|A|1885
8YUO|1|a|U|1886
8YUO|1|a|C|1887
8YUO|1|a|G|1888
8YUO|1|a|A|1889
8YUO|1|a|A|1890
8YUO|1|a|G|1891

Current chains

Chain a
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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