IL_8YUP_022
3D structure
- PDB id
- 8YUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.39 Å
Loop
- Sequence
- GAAGGG*CAUUGAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YUP_022 not in the Motif Atlas
- Homologous match to IL_5J7L_023
- Geometric discrepancy: 0.1203
- The information below is about IL_5J7L_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_70801.1
- Basepair signature
- cWW-cWW-L-R-tWW-L-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
8YUP|1|A|G|450
8YUP|1|A|A|451
8YUP|1|A|A|452
8YUP|1|A|G|453
8YUP|1|A|G|454
8YUP|1|A|G|455
*
8YUP|1|A|C|477
8YUP|1|A|A|478
8YUP|1|A|U|479
8YUP|1|A|U|480
8YUP|1|A|G|481
8YUP|1|A|A|482
8YUP|1|A|C|483
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain P
- 30S ribosomal protein S16
Coloring options: