IL_8YUP_085

3D structure

PDB id

8YUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

8YUP|1|a|G|776, 8YUP|1|a|A|788, 8YUP|1|a|A|789, 8YUP|1|a|U|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YUP_085 not in the Motif Atlas

Geometric match to IL_5J7L_265

Geometric discrepancy: 0.0808

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

8YUP|1|a|G|775
8YUP|1|a|G|776
8YUP|1|a|G|777
*
8YUP|1|a|C|787
8YUP|1|a|A|788
8YUP|1|a|A|789
8YUP|1|a|U|790
8YUP|1|a|C|791

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain c

50S ribosomal protein L2

Chain r

50S ribosomal protein L22