IL_8YUQ_024

3D structure

PDB id

8YUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

8YUQ|1|A|A|532, 8YUQ|1|A|U|534, 8YUQ|1|A|A|535

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YUQ_024 not in the Motif Atlas

Homologous match to IL_4LFB_021

Geometric discrepancy: 0.2386

The information below is about IL_4LFB_021

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.4

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8YUQ|1|A|G|515
8YUQ|1|A|PSU|516
8YUQ|1|A|G|517
8YUQ|1|A|C|518
8YUQ|1|A|C|519
8YUQ|1|A|A|520
8YUQ|1|A|G|521
*
8YUQ|1|A|C|528
8YUQ|1|A|G|529
8YUQ|1|A|G|530
8YUQ|1|A|U|531
8YUQ|1|A|A|532
8YUQ|1|A|A|533
8YUQ|1|A|U|534
8YUQ|1|A|A|535
8YUQ|1|A|C|536

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

30S ribosomal protein S3

Chain D

30S ribosomal protein S4

Chain L

30S ribosomal protein S12

Chain W

mRNA

Chain X

Transfer RNA; tRNA