3D structure

PDB id
8YUQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.41 Å

Loop

Sequence
CGGAUU*AUGAAG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8YUQ_055 not in the Motif Atlas
Homologous match to IL_4LFB_055
Geometric discrepancy: 0.0825
The information below is about IL_4LFB_055
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_85536.2
Basepair signature
cWW-tSH-L-R-tHS-cWW-cWW
Number of instances in this motif group
8

Unit IDs

8YUQ|1|A|C|1303
8YUQ|1|A|G|1304
8YUQ|1|A|G|1305
8YUQ|1|A|A|1306
8YUQ|1|A|U|1307
8YUQ|1|A|U|1308
*
8YUQ|1|A|A|1329
8YUQ|1|A|U|1330
8YUQ|1|A|G|1331
8YUQ|1|A|A|1332
8YUQ|1|A|A|1333
8YUQ|1|A|G|1334

Current chains

Chain A
16S rRNA

Nearby chains

Chain M
30S ribosomal protein S13

Coloring options:


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