3D structure

PDB id
8YUQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.41 Å

Loop

Sequence
GGG*CAAUC
Length
8 nucleotides
Bulged bases
8YUQ|1|a|G|776, 8YUQ|1|a|A|788, 8YUQ|1|a|A|789, 8YUQ|1|a|U|790
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8YUQ_085 not in the Motif Atlas
Geometric match to IL_5J7L_265
Geometric discrepancy: 0.0746
The information below is about IL_5J7L_265
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_06549.2
Basepair signature
cWW-cWW
Number of instances in this motif group
6

Unit IDs

8YUQ|1|a|G|775
8YUQ|1|a|G|776
8YUQ|1|a|G|777
*
8YUQ|1|a|C|787
8YUQ|1|a|A|788
8YUQ|1|a|A|789
8YUQ|1|a|U|790
8YUQ|1|a|C|791

Current chains

Chain a
23S rRNA

Nearby chains

Chain 1
50S ribosomal protein L34
Chain c
50S ribosomal protein L2
Chain r
50S ribosomal protein L22

Coloring options:


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