IL_8YUQ_137

3D structure

PDB id

8YUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YUQ_137 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0535

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8YUQ|1|a|U|1851
8YUQ|1|a|U|1852
8YUQ|1|a|A|1853
8YUQ|1|a|A|1854
8YUQ|1|a|U|1855
8YUQ|1|a|U|1856
8YUQ|1|a|G|1857
8YUQ|1|a|A|1858
8YUQ|1|a|U|1859
8YUQ|1|a|G|1860
*
8YUQ|1|a|U|1882
8YUQ|1|a|U|1883
8YUQ|1|a|G|1884
8YUQ|1|a|A|1885
8YUQ|1|a|U|1886
8YUQ|1|a|C|1887
8YUQ|1|a|G|1888
8YUQ|1|a|A|1889
8YUQ|1|a|A|1890
8YUQ|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains