IL_8YUQ_151

3D structure

PDB id

8YUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

AG*(OMC)CU

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YUQ_151 not in the Motif Atlas

Homologous match to IL_5J7L_391

Geometric discrepancy: 0.0904

The information below is about IL_5J7L_391

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

8YUQ|1|a|A|2453
8YUQ|1|a|G|2454
*
8YUQ|1|a|OMC|2498
8YUQ|1|a|C|2499
8YUQ|1|a|U|2500

Current chains

Chain a

23S rRNA

Nearby chains

Chain X

Transfer RNA; tRNA

Chain d

50S ribosomal protein L3