IL_8YUR_126

3D structure

PDB id

8YUR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 and Am4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YUR_126 not in the Motif Atlas

Geometric match to IL_5J7L_386

Geometric discrepancy: 0.0425

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

8YUR|1|a|G|1666
8YUR|1|a|G|1667
8YUR|1|a|A|1668
8YUR|1|a|A|1669
8YUR|1|a|C|1670
8YUR|1|a|U|1671
8YUR|1|a|A|1672
8YUR|1|a|G|1673
8YUR|1|a|G|1674
*
8YUR|1|a|C|1990
8YUR|1|a|U|1991
8YUR|1|a|G|1992
8YUR|1|a|U|1993
8YUR|1|a|C|1994

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain j

50S ribosomal protein L14