IL_8Z70_005

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAU*AG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Z70_005 not in the Motif Atlas

Homologous match to IL_8C3A_396

Geometric discrepancy: 0.1098

The information below is about IL_8C3A_396

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58310.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

8Z70|1|2|C|50
8Z70|1|2|A|51
8Z70|1|2|U|52
*
8Z70|1|2|A|428
8Z70|1|2|G|429

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Sd

Small ribosomal subunit protein eS24A

Chain s

Transfer RNA; tRNA

Chain x

Elongation factor 1-alpha 1