3D structure

PDB id
8Z70 (explore in PDB, NAKB, or RNA 3D Hub)
Description
State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GUUA*UUUC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Z70_008 not in the Motif Atlas
Homologous match to IL_8C3A_399
Geometric discrepancy: 0.1435
The information below is about IL_8C3A_399
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_54697.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
51

Unit IDs

8Z70|1|2|G|109
8Z70|1|2|U|110
8Z70|1|2|U|111
8Z70|1|2|A|112
*
8Z70|1|2|U|302
8Z70|1|2|U|303
8Z70|1|2|U|304
8Z70|1|2|C|305

Current chains

Chain 2
18S rRNA

Nearby chains

Chain SS
Small ribosomal subunit protein eS4A
Chain SV
Small ribosomal subunit protein eS8A
Chain SX
Small ribosomal subunit protein uS17A

Coloring options:


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