3D structure

PDB id
8Z70 (explore in PDB, NAKB, or RNA 3D Hub)
Description
State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UAUAAC*GCUAAUA
Length
13 nucleotides
Bulged bases
8Z70|1|2|U|170
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Z70_011 not in the Motif Atlas
Geometric match to IL_4LFB_009
Geometric discrepancy: 0.2024
The information below is about IL_4LFB_009
Detailed Annotation
tWH-tWH-tHW-tHW
Broad Annotation
No text annotation
Motif group
IL_12745.1
Basepair signature
cWW-tWH-tWH-tHW-tHW-cWW
Number of instances in this motif group
1

Unit IDs

8Z70|1|2|U|144
8Z70|1|2|A|145
8Z70|1|2|U|146
8Z70|1|2|A|147
8Z70|1|2|A|148
8Z70|1|2|C|149
*
8Z70|1|2|G|165
8Z70|1|2|C|166
8Z70|1|2|U|167
8Z70|1|2|A|168
8Z70|1|2|A|169
8Z70|1|2|U|170
8Z70|1|2|A|171

Current chains

Chain 2
18S rRNA

Nearby chains

Chain ST
Small ribosomal subunit protein eS6A
Chain Sd
Small ribosomal subunit protein eS24A
Chain Y
Large ribosomal subunit protein eL24A

Coloring options:


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