3D structure

PDB id
8Z70 (explore in PDB, NAKB, or RNA 3D Hub)
Description
State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGAU*GCAC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Z70_053 not in the Motif Atlas
Homologous match to IL_8P9A_426
Geometric discrepancy: 0.1317
The information below is about IL_8P9A_426
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

8Z70|1|2|G|1041
8Z70|1|2|G|1042
8Z70|1|2|A|1043
8Z70|1|2|U|1044
*
8Z70|1|2|G|1074
8Z70|1|2|C|1075
8Z70|1|2|A|1076
8Z70|1|2|C|1077

Current chains

Chain 2
18S rRNA

Nearby chains

Chain SP
Small ribosomal subunit protein uS2A
Chain SQ
Small ribosomal subunit protein eS1A
Chain SY
Small ribosomal subunit protein uS15
Chain Se
Small ribosomal subunit protein eS26A

Coloring options:


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