3D structure

PDB id
8Z70 (explore in PDB, NAKB, or RNA 3D Hub)
Description
State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CCU*GCG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Z70_059 not in the Motif Atlas
Homologous match to IL_8C3A_450
Geometric discrepancy: 0.1425
The information below is about IL_8C3A_450
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_10289.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
237

Unit IDs

8Z70|1|2|C|1173
8Z70|1|2|C|1174
8Z70|1|2|U|1175
*
8Z70|1|2|G|1464
8Z70|1|2|C|1465
8Z70|1|2|G|1466

Current chains

Chain 2
18S rRNA

Nearby chains

Chain SF
Small ribosomal subunit protein uS9A
Chain SH
Small ribosomal subunit protein uS13A
Chain SI
Small ribosomal subunit protein eS19A
Chain SJ
Small ribosomal subunit protein uS10
Chain t
Transfer RNA; tRNA

Coloring options:


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