IL_8Z70_069

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Z70_069 not in the Motif Atlas

Homologous match to IL_8P9A_442

Geometric discrepancy: 0.1032

The information below is about IL_8P9A_442

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

8Z70|1|2|U|1290
8Z70|1|2|G|1291
8Z70|1|2|G|1292
*
8Z70|1|2|C|1323
8Z70|1|2|G|1324
8Z70|1|2|A|1325

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SA

Small ribosomal subunit protein uS3

Chain SG

Small ribosomal subunit protein eS17A

Chain SP

Small ribosomal subunit protein uS2A

Chain SR

Small ribosomal subunit protein uS5