IL_8Z70_073

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUG*UUAUC

Length

8 nucleotides

Bulged bases

8Z70|1|2|U|1370, 8Z70|1|2|A|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Z70_073 not in the Motif Atlas

Homologous match to IL_8C3A_464

Geometric discrepancy: 0.5521

The information below is about IL_8C3A_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8Z70|1|2|G|1352
8Z70|1|2|U|1353
8Z70|1|2|G|1354
*
8Z70|1|2|U|1369
8Z70|1|2|U|1370
8Z70|1|2|A|1371
8Z70|1|2|U|1372
8Z70|1|2|C|1373

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SF

Small ribosomal subunit protein uS9A

Chain SI

Small ribosomal subunit protein eS19A

Chain SJ

Small ribosomal subunit protein uS10