3D structure

PDB id
8Z70 (explore in PDB, NAKB, or RNA 3D Hub)
Description
State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGGAUA*UUCAAC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Z70_078 not in the Motif Atlas
Homologous match to IL_8C3A_507
Geometric discrepancy: 0.1269
The information below is about IL_8C3A_507
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_85536.1
Basepair signature
cWW-tSH-L-R-L-R-cWW-cWW
Number of instances in this motif group
7

Unit IDs

8Z70|1|2|G|1540
8Z70|1|2|G|1541
8Z70|1|2|G|1542
8Z70|1|2|A|1543
8Z70|1|2|U|1544
8Z70|1|2|A|1545
*
8Z70|1|2|U|1566
8Z70|1|2|U|1567
8Z70|1|2|C|1568
8Z70|1|2|A|1569
8Z70|1|2|A|1570
8Z70|1|2|C|1571

Current chains

Chain 2
18S rRNA

Nearby chains

Chain SH
Small ribosomal subunit protein uS13A
Chain SI
Small ribosomal subunit protein eS19A
Chain SK
Small ribosomal subunit protein eS25A

Coloring options:


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