IL_8Z70_130

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUU*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Z70_130 not in the Motif Atlas

Homologous match to IL_8P9A_272

Geometric discrepancy: 0.1476

The information below is about IL_8P9A_272

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8Z70|1|A|C|1069
8Z70|1|A|U|1070
8Z70|1|A|U|1071
*
8Z70|1|A|G|1087
8Z70|1|A|U|1088
8Z70|1|A|G|1089

Current chains

Chain A

25S rRNA

Nearby chains

Chain V

Large ribosomal subunit protein eL21A

Chain d

Large ribosomal subunit protein eL29