IL_8Z70_138

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8Z70|1|A|U|1208

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Z70_138 not in the Motif Atlas

Homologous match to IL_8P9A_281

Geometric discrepancy: 0.2148

The information below is about IL_8P9A_281

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8Z70|1|A|G|1207
8Z70|1|A|U|1208
8Z70|1|A|G|1209
*
8Z70|1|A|C|1296
8Z70|1|A|C|1297

Current chains

Chain A

25S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain K

Large ribosomal subunit protein uL6A

Chain U

Large ribosomal subunit protein eL20A

Chain o

Large ribosomal subunit protein eL40A