IL_8Z70_183
3D structure
- PDB id
- 8Z70 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAA*UCC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Z70_183 not in the Motif Atlas
- Geometric match to IL_7ECN_002
- Geometric discrepancy: 0.2927
- The information below is about IL_7ECN_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
8Z70|1|A|G|2534
8Z70|1|A|A|2535
8Z70|1|A|A|2536
*
8Z70|1|A|U|2544
8Z70|1|A|C|2545
8Z70|1|A|C|2546
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain D
- Large ribosomal subunit protein uL2A
- Chain J
- Large ribosomal subunit protein eL8A
- Chain SQ
- Small ribosomal subunit protein eS1A
- Chain i
- Large ribosomal subunit protein eL34A
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