IL_8Z70_188
3D structure
- PDB id
- 8Z70 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGCU*GAUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Z70_188 not in the Motif Atlas
- Homologous match to IL_8C3A_111
- Geometric discrepancy: 0.2401
- The information below is about IL_8C3A_111
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50458.1
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
8Z70|1|A|G|2823
8Z70|1|A|G|2824
8Z70|1|A|C|2825
8Z70|1|A|U|2826
*
8Z70|1|A|G|2863
8Z70|1|A|A|2864
8Z70|1|A|U|2865
8Z70|1|A|U|2866
8Z70|1|A|C|2867
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain E
- Large ribosomal subunit protein uL3
- Chain L
- Large ribosomal subunit protein uL16
- Chain d
- Large ribosomal subunit protein eL29
Coloring options: