IL_8Z70_193

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

8Z70|1|A|G|2945, 8Z70|1|A|A|2946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Z70_193 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.1119

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8Z70|1|A|C|2879
8Z70|1|A|U|2880
8Z70|1|A|C|2881
*
8Z70|1|A|G|2943
8Z70|1|A|U|2944
8Z70|1|A|G|2945
8Z70|1|A|A|2946
8Z70|1|A|G|2947

Current chains

Chain A

25S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL3

Chain X

Large ribosomal subunit protein uL14A