IL_8Z70_206

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

8Z70|1|A|A|3130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Z70_206 not in the Motif Atlas

Homologous match to IL_8C3A_129

Geometric discrepancy: 0.101

The information below is about IL_8C3A_129

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

8Z70|1|A|A|3103
8Z70|1|A|U|3104
8Z70|1|A|U|3105
8Z70|1|A|A|3106
8Z70|1|A|U|3107
*
8Z70|1|A|A|3127
8Z70|1|A|G|3128
8Z70|1|A|A|3129
8Z70|1|A|A|3130
8Z70|1|A|U|3131

Current chains

Chain A

25S rRNA

Nearby chains

Chain K

Large ribosomal subunit protein uL6A

Chain Q

Large ribosomal subunit protein uL13A

Chain o

Large ribosomal subunit protein eL40A