IL_8Z70_207

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CACA*UGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Z70_207 not in the Motif Atlas

Geometric match to IL_7R9G_002

Geometric discrepancy: 0.1908

The information below is about IL_7R9G_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8Z70|1|A|C|3164
8Z70|1|A|A|3165
8Z70|1|A|C|3166
8Z70|1|A|A|3167
*
8Z70|1|A|U|3283
8Z70|1|A|G|3284
8Z70|1|A|C|3285
8Z70|1|A|G|3286

Current chains

Chain A

25S rRNA

Nearby chains

Chain h

Large ribosomal subunit protein eL33A