3D structure

PDB id
8Z70 (explore in PDB, NAKB, or RNA 3D Hub)
Description
State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UUUG*CUUA
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Z70_215 not in the Motif Atlas
Homologous match to IL_8P9A_356
Geometric discrepancy: 0.23
The information below is about IL_8P9A_356
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_77658.1
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
34

Unit IDs

8Z70|1|A|U|3300
8Z70|1|A|U|3301
8Z70|1|A|U|3302
8Z70|1|A|G|3303
*
8Z70|1|A|C|3311
8Z70|1|A|U|3312
8Z70|1|A|U|3313
8Z70|1|A|A|3314

Current chains

Chain A
25S rRNA

Nearby chains

Chain E
Large ribosomal subunit protein uL3
Chain R
Large ribosomal subunit protein uL22A
Chain f
Large ribosomal subunit protein eL31A

Coloring options:


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