IL_8Z70_231
3D structure
- PDB id
- 8Z70 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UCUCCG*CGGAAA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Z70_231 not in the Motif Atlas
- Geometric match to IL_5TBW_476
- Geometric discrepancy: 0.3144
- The information below is about IL_5TBW_476
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
8Z70|1|s|U|2
8Z70|1|s|C|3
8Z70|1|s|U|4
8Z70|1|s|C|5
8Z70|1|s|C|6
8Z70|1|s|G|7
*
8Z70|1|s|C|67
8Z70|1|s|G|68
8Z70|1|s|G|69
8Z70|1|s|A|70
8Z70|1|s|A|71
8Z70|1|s|A|72
Current chains
- Chain s
- tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain Sc
- Small ribosomal subunit protein uS12A
- Chain x
- Elongation factor 1-alpha 1
Coloring options: