IL_8Z70_235

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Z70_235 not in the Motif Atlas

Homologous match to IL_8P9A_269

Geometric discrepancy: 0.1614

The information below is about IL_8P9A_269

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

8Z70|1|A|A|1006
8Z70|1|A|U|1007
8Z70|1|A|U|1008
8Z70|1|A|A|1009
*
8Z70|1|A|U|1041
8Z70|1|A|U|1042
8Z70|1|A|C|1043
8Z70|1|A|U|1044

Current chains

Chain A

25S rRNA

Nearby chains

Chain G

Large ribosomal subunit protein uL18

Chain L

Large ribosomal subunit protein uL16