IL_8Z71_011

3D structure

PDB id

8Z71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UAUAAC*GCUAAUA

Length

13 nucleotides

Bulged bases

8Z71|1|2|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Z71_011 not in the Motif Atlas

Geometric match to IL_4LFB_009

Geometric discrepancy: 0.2024

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_00680.1

Basepair signature

cWW-L-R-tWH-L-R-L-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8Z71|1|2|U|144
8Z71|1|2|A|145
8Z71|1|2|U|146
8Z71|1|2|A|147
8Z71|1|2|A|148
8Z71|1|2|C|149
*
8Z71|1|2|G|165
8Z71|1|2|C|166
8Z71|1|2|U|167
8Z71|1|2|A|168
8Z71|1|2|A|169
8Z71|1|2|U|170
8Z71|1|2|A|171

Current chains

Chain 2

18S rRNA

Nearby chains

Chain ST

Small ribosomal subunit protein eS6A

Chain Sd

Small ribosomal subunit protein eS24A

Chain Y

Large ribosomal subunit protein eL24A