IL_8Z71_019
3D structure
- PDB id
- 8Z71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UAUCAA*UUUCAACG
- Length
- 14 nucleotides
- Bulged bases
- 8Z71|1|2|U|313, 8Z71|1|2|C|351
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Z71_019 not in the Motif Atlas
- Homologous match to IL_8P9A_391
- Geometric discrepancy: 0.1362
- The information below is about IL_8P9A_391
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.4
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8Z71|1|2|U|311
8Z71|1|2|A|312
8Z71|1|2|U|313
8Z71|1|2|C|314
8Z71|1|2|A|315
8Z71|1|2|A|316
*
8Z71|1|2|U|348
8Z71|1|2|U|349
8Z71|1|2|U|350
8Z71|1|2|C|351
8Z71|1|2|A|352
8Z71|1|2|A|353
8Z71|1|2|C|354
8Z71|1|2|G|355
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain SV
- Small ribosomal subunit protein eS8A
- Chain SX
- Small ribosomal subunit protein uS17A
- Chain Sc
- Small ribosomal subunit protein uS12A
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