IL_8Z71_077

3D structure

PDB id

8Z71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Z71_077 not in the Motif Atlas

Homologous match to IL_8P9A_450

Geometric discrepancy: 0.128

The information below is about IL_8P9A_450

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_76776.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8Z71|1|2|C|1495
8Z71|1|2|U|1496
8Z71|1|2|U|1497
8Z71|1|2|G|1498
*
8Z71|1|2|C|1509
8Z71|1|2|U|1510
8Z71|1|2|U|1511
8Z71|1|2|G|1512

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SI

Small ribosomal subunit protein eS19A