IL_8Z71_161

3D structure

PDB id

8Z71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

8Z71|1|A|G|2335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Z71_161 not in the Motif Atlas

Homologous match to IL_8C3A_083

Geometric discrepancy: 0.2221

The information below is about IL_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8Z71|1|A|A|1901
8Z71|1|A|G|1902
8Z71|1|A|U|1903
8Z71|1|A|C|1904
8Z71|1|A|G|1905
8Z71|1|A|G|1906
*
8Z71|1|A|C|2333
8Z71|1|A|U|2334
8Z71|1|A|G|2335
8Z71|1|A|U|2336

Current chains

Chain A

25S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL3

Chain X

Large ribosomal subunit protein uL14A